Did you enjoy NextFlow webinar and want more on reproducible and scalable pipelines? This week we will get to know Snakemake, a Python-based workflow management system!
Be prepared for the practical part!
Before the tutorial, please install miniconda and create a snakemake environment with the following command:
conda create -n ngstutorial -c bioconda snakemake
Speaker: David Koppstein
David is a postdoctoral researcher in Rajewsky's group at the Max Delbrück Center for Molecular Medicine in Berlin where he works on alternativernative RNA isoforms in neurodegenerative disease. He received a PhD in Biology from Massachusetts Institute of Technology and Bachelor's in Molecular Biophysics and Biochemistry from Yale. David is a member of the development team of Snakemake and one of the contributors to Bioconda.