#NGSchool2018 Materials

Materials in this book are reproduced as an internal material for participants of the Summer School in Bioinformatics & NGS Data Analysis (#NGSchool2018). If you want to use any of the materials included here for other purposes, please ask individual contributors for the permission

# login to remote server (in cases when using own laptop is not possible)
ssh username@vm1.ngschool.xyz
# or
ssh username@147.228.242.14
  • remote server for the hackathons:
# login to remote server (in cases when using own laptop is not possible)
ssh username@vm2.ngschool.xyz
# or
ssh username@147.228.242.15
    • configuring conda environments
    # download miniconda
    wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
    # install miniconda
    bash Miniconda2-latest-Linux-x86_64.sh
    # add path to the pre-configured shared environments
    # create config file in the home folder
    touch .condarc
    # put the following text into the file and save (use your favorite text editor)
    envs_dirs:
     - /mnt/shared_conda/envs
    # re-bash
    bash
    # check if everything is ok and you see the envs
    conda info -e
    # activate needed env
    source activate nameoftheenvironment
    
      • where to find data for the workshops
      # change to the directory
      cd /mnt
      # check the content
      ls -al
        • activate additional env variables for HumanSV hackathon
        # change to the dir
        source /mnt/humanSV/.humansv